Signature de la greffe

Pseudo-Bulk

Effet greffe total

Liste des gènes différentiellement exprimés

Figure

## Warning: Removed 10 rows containing missing values (geom_point).
## Warning: Removed 10 rows containing missing values (geom_label_repel).
## Warning: ggrepel: 554 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

Effet greffe sans l’effet subtilisine & des databases (union FL + union DB papiers)

Liste des gènes différentiellement exprimés

Figures

## Warning: Removed 2 rows containing missing values (geom_point).
## Warning: Removed 2 rows containing missing values (geom_label_repel).
## Warning: ggrepel: 433 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

Single-Cell

PCA

Liste des gènes différentiellement exprimés

## Centering and scaling data matrix

Volcano plot : FDRvsFC

Heatmap : Tous les DEGs

Intersection

Venn Diagram

Liste

##   [1] "ENO1"         "SH3BGRL3"     "GNG5"         "TENT5C"       "CCT3"        
##   [6] "LY9"          "RGS1"         "FCMR"         "DUSP10"       "YPEL5"       
##  [11] "STK17B"       "BRK1"         "MTRNR2L12"    "UCHL1"        "RASGEF1B"    
##  [16] "MAT2B"        "CD83"         "TUBB"         "CLIC1"        "CITED2"      
##  [21] "TAGAP"        "SBDS"         "GAPDH"        "SLC2A3"       "CD69"        
##  [26] "PTGES3"       "ATP2B1-AS1"   "RAN"          "RGCC"         "ERH"         
##  [31] "ANXA2"        "RPS27L"       "CORO1A"       "UBB"          "MYL12B"      
##  [36] "CIRBP"        "COX6B1"       "EMP3"         "ZNF331"       "ATP5PF"      
##  [41] "RBM3"         "PIM2"         "PLP2"         "TSC22D3"      "RBX1"        
##  [46] "NDUFB3"       "ANXA5"        "COX5B"        "CYCS"         "IL2RG"       
##  [51] "HVCN1"        "JMJD1C"       "S100A11"      "OSER1"        "LSM10"       
##  [56] "CSKMT"        "DDIT4"        "ATP5F1A"      "NDUFC1"       "CCT5"        
##  [61] "MYL12A"       "TSPYL2"       "LSP1"         "STAG3"        "HLA-E"       
##  [66] "RCSD1"        "ARPC5"        "TRMT112"      "HIST1H1E"     "PSMD4"       
##  [71] "G3BP2"        "HIST1H2BC"    "ANP32A"       "CLTA"         "NDUFAB1"     
##  [76] "PSMB6"        "BANF1"        "RNF19A"       "BCAS2"        "MRPL51"      
##  [81] "CPNE5"        "TALDO1"       "GLA"          "PKM"          "SEC61G"      
##  [86] "AMD1"         "CCR7"         "CCNDBP1"      "FAM53C"       "RPL34"       
##  [91] "GMFG"         "NDUFB10"      "PTPN6"        "GDI2"         "SPIB"        
##  [96] "SNHG12"       "TXN"          "C14orf119"    "PSMB4"        "NDUFA12"     
## [101] "VAMP8"        "YPEL3"        "ADH5"         "SNRPE"        "SRSF2"       
## [106] "RAC1"         "AIM2"         "KIF9"         "CYTIP"        "PGK1"        
## [111] "HNRNPDL"      "MRPS18B"      "FNIP1"        "BIK"          "IDS"         
## [116] "MRPS34"       "ISCU"         "GSTP1"        "CAP1"         "SELL"        
## [121] "TPI1"         "ACTR3"        "SRP9"         "AFF4"         "NDUFC2"      
## [126] "NDUFV2"       "JCHAIN"       "PSMA2"        "HIST1H1D"     "PCBP1"       
## [131] "PTGER4"       "BCLAF1"       "ZBTB10"       "ADRM1"        "RBBP6"       
## [136] "RNGTT"        "RRP12"        "SOD1"         "MRPL17"       "WSB1"        
## [141] "DAD1"         "ATP6V0C"      "CFAP20"       "MEAF6"        "COX20"       
## [146] "TXNL1"        "MAGOH"        "SREBF2-AS1"   "HNRNPF"       "EPC1"        
## [151] "LINC-PINT"    "TXNDC17"      "ATP5PD"       "PRDX3"        "MAPK1IP1L"   
## [156] "EEF1D"        "MEA1"         "LDHA"         "ARL6IP1"      "SARAF"       
## [161] "RPS15A"       "VKORC1"       "MRM2"         "PIN4"         "SNHG1"       
## [166] "ILK"          "SF3B4"        "COPZ1"        "PDHB"         "ALG13"       
## [171] "MRPS18C"      "AIP"          "TRAF3IP3"     "NDUFB4"       "ZNF10"       
## [176] "SDHC"         "GADD45GIP1"   "SARS"         "ALOX5"        "NAGK"        
## [181] "PYCR2"        "IMP3"         "SSBP1"        "EIF2AK3"      "DAXX"        
## [186] "CREM"         "BACH1"        "STIP1"        "SUMO1"        "SNRPG"       
## [191] "NSMCE1"       "OTUD1"        "KBTBD8"       "RAB11A"       "MED11"       
## [196] "CCT6A"        "NEIL1"        "PFDN6"        "DNAJB9"       "PEX11B"      
## [201] "PDCD4"        "MAPRE2"       "ISCA2"        "CAPZA1"       "GHITM"       
## [206] "ZNF706"       "NDUFB6"       "CIAO2A"       "KDM2A"        "AC004687.1"  
## [211] "GTF2B"        "AL135905.2"   "LAMTOR2"      "AC087239.1"   "MRFAP1L1"    
## [216] "MRPL34"       "ELF1"         "GEMIN6"       "MRPS26"       "PAGR1"       
## [221] "TTC1"         "TWF2"         "CCT8"         "CHTF8"        "RPL39"       
## [226] "MRPL36"       "MZB1"         "VCPKMT"       "IQGAP1"       "LTA4H"       
## [231] "PSMG2"        "GPI"          "CXXC5"        "UBE2I"        "LYSMD2"      
## [236] "DHRS7"        "AP2S1"        "S1PR4"        "SNHG3"        "MDH1"        
## [241] "APOBEC3C"     "SOCS1"        "NDUFA8"       "MAGED2"       "CD9"         
## [246] "UBXN11"       "NDUFS6"       "RDH14"        "PA2G4"        "PYCARD"      
## [251] "SF3A3"        "PCMT1"        "OSTF1"        "MTMR6"        "MRPS12"      
## [256] "CCT7"         "VDAC1"        "EIF6"         "SNHG9"        "ACTL6A"      
## [261] "SIAH2"        "OAS1"         "RNF139"       "GPR183"       "FADD"        
## [266] "CD72"         "ST8SIA4"      "TLE4"         "HMOX1"        "RPP25L"      
## [271] "FNBP4"        "SH2B2"        "AL118516.1"   "ARRDC3"       "COA3"        
## [276] "DPF2"         "BCL2"         "PYURF"        "SNX1"         "FARSA"       
## [281] "RPL21"        "HAX1"         "HDAC2"        "MRPS14"       "PSMB8-AS1"   
## [286] "PDCD5"        "CDC123"       "VPS72"        "PSMA6"        "SERPINB9"    
## [291] "UBL7"         "PHB"          "LSM6"         "NDUFS2"       "MRPS23"      
## [296] "NOSIP"        "MPLKIP"       "NUDT5"        "HIF1A"        "MRPL20"      
## [301] "SRI"          "CAPG"         "GSPT2"        "SUPT4H1"      "LYPLAL1"     
## [306] "GPR18"        "SNAPIN"       "POLR3K"       "SHMT2"        "SEPHS2"      
## [311] "CFDP1"        "SSNA1"        "GYG1"         "MRPL40"       "THYN1"       
## [316] "PSMC4"        "PSMB2"        "AC007952.4"   "AARS"         "MRPS6"       
## [321] "MCUB"         "NSL1"         "TSSC4"        "GRAMD1C"      "NDUFA6"      
## [326] "TRADD"        "BCL6"         "BFSP2"        "ADPRHL2"      "AC025164.1"  
## [331] "ATOX1"        "ARGLU1"       "PSMD6"        "KMT2E-AS1"    "LPAR5"       
## [336] "TAPBP"        "VPS35"        "DAZAP2"       "RAB30"        "PPP1R18"     
## [341] "DDX39B"       "RLF"          "NUP58"        "DLGAP1-AS1"   "LDLRAD4"     
## [346] "RPA2"         "DARS"         "ARID5B"       "ICAM2"        "DCTPP1"      
## [351] "PHAX"         "MRPL24"       "EPRS"         "CDC26"        "DMXL1"       
## [356] "PPP1R2"       "AAMP"         "PSMA5"        "KRCC1"        "MARCKSL1"    
## [361] "VAT1"         "CCDC90B"      "LAPTM5"       "CRYZ"         "FKBP4"       
## [366] "RPA3"         "B4GALT1"      "CYSTM1"       "CARS"         "CCDC144A"    
## [371] "KMT2E"        "DOK1"         "WARS"         "YIPF3"        "HSBP1"       
## [376] "FAM102A"      "SNHG5"        "TMEM60"       "CLPP"         "MRPL52"      
## [381] "IKBIP"        "THAP11"       "TRAPPC4"      "UNC50"        "PDCD10"      
## [386] "COMMD3"       "COPB2"        "TMEM9B"       "APEX2"        "CCM2"        
## [391] "RNF5"         "G3BP1"        "NDUFB5"       "SEC13"        "ATP2B1"      
## [396] "AC017104.1"   "CHTOP"        "TARS"         "FAIM"         "PRPSAP2"     
## [401] "THOC7"        "HERPUD2"      "PAG1"         "ASF1A"        "DPY30"       
## [406] "SDHD"         "IER3IP1"      "EIF2S1"       "SUGT1"        "TBC1D10C"    
## [411] "AP1S2"        "C2orf74"      "TMEM11"       "TXNDC9"       "CNIH4"       
## [416] "TTC9C"        "FADS3"        "UTP3"         "MAEA"         "NDUFS3"      
## [421] "ZNF669"       "MDM4"         "BNIP3"        "CXCR5"        "COA4"        
## [426] "ZNF394"       "RAB10"        "CD70"         "GRHPR"        "IFT57"       
## [431] "TMEM35B"      "NAA20"        "PARP14"       "UGP2"         "AP3S1"       
## [436] "BCL2A1"       "C1orf52"      "PHACTR1"      "PDHA1"        "C1D"         
## [441] "TNFAIP8"      "AC023590.1"   "LYPLA2"       "TP53INP1"     "CCDC59"      
## [446] "RNF145"       "MRPL15"       "SUCLG1"       "HIST2H2AC"    "TSG101"      
## [451] "KLHL6"        "UBA2"         "DDX3Y"        "P2RX5"        "TOGARAM1"    
## [456] "ACADM"        "GSTO1"        "DECR1"        "DBF4"         "FLI1"        
## [461] "CPNE1"        "PSMA4"        "SMARCE1"      "COMTD1"       "MBNL1"       
## [466] "LCP1"         "MRPL22"       "RMI2"         "PSMA1"        "ACD"         
## [471] "PCBD1"        "ANXA7"        "GLRX2"        "VBP1"         "CHCHD1"      
## [476] "PRPF19"       "AL627171.2"   "NLRP4"        "ATF7IP2"      "PHPT1"       
## [481] "CD22"         "EIF4EBP1"     "HBP1"         "RBM38"        "SNHG6"       
## [486] "TRIM22"       "CHMP2A"       "TACC1"        "FMC1"         "EAF2"        
## [491] "SEC14L1"      "ADA"          "RASL11A"      "ARL2"         "MTIF3"       
## [496] "SESN3"        "RNASEH2B"     "CYP51A1"      "KIAA0040"     "EIF1B"       
## [501] "AKR1B1"       "CNR1"         "SSBP4"        "MIR181A1HG"   "SLBP"        
## [506] "HMGN4"        "METTL5"       "ELL3"         "ITGB1BP1"     "LINC01578"   
## [511] "PFDN4"        "NIFK"         "AATF"         "MRPL14"       "HPRT1"       
## [516] "CBLB"         "PSMD10"       "PDCD2"        "SMAP2"        "RBM33"       
## [521] "CLEC2B"       "FDX1"         "TLR1"         "RBM7"         "HLA-F"       
## [526] "RIPK2"        "RPS20"        "HNRNPA0"      "TRIB2"        "EML4"        
## [531] "MARCH6"       "CENPC"        "ASXL1"        "NUFIP2"       "H1FX"        
## [536] "CREBRF"       "SNX29"        "WTAP"         "MMD"          "USP15"       
## [541] "DDX6"         "PNN"          "CDKN2AIP"     "PDLIM1"       "CHD2"        
## [546] "ARHGDIA"      "TRAF5"        "SAMSN1"       "SRSF3"        "SLC37A1"     
## [551] "NSD3"         "MON2"         "RNMT"         "EIF4A1"       "FOXO1"       
## [556] "PPDPF"        "RNF144B"      "HOTAIRM1"     "ZEB2"         "ERAP2"       
## [561] "CCNH"         "RBMX"         "USP6NL"       "MICAL3"       "GNA13"       
## [566] "TNKS"         "RANBP2"       "CAPN7"        "FCHSD2"       "EPB41L4A-AS1"
## [571] "SC5D"         "PARP15"       "MEF2A"        "S100A6"       "CHD1"        
## [576] "AKIRIN2"      "UGCG"         "ZNF791"       "PTPN7"        "RBM25"       
## [581] "CDKN1B"       "LUC7L"        "RNF138"       "CNST"         "TAF11"       
## [586] "ATF7IP"       "AKAP13"       "ADAM28"       "TMEM131L"     "BTAF1"       
## [591] "DNAJC10"      "SAP18"        "SNIP1"        "RLIM"         "AC007384.1"  
## [596] "LGALS1"       "TUT7"         "AZIN1"        "SLC30A4"      "MIR3681HG"   
## [601] "PHTF2"        "PRNP"         "WIPF1"        "USP36"        "FAM49A"      
## [606] "PIKFYVE"      "KLHL24"       "ZNF827"       "PRDM15"       "OTULIN"      
## [611] "AL450998.2"   "SSH2"         "STK4"         "TMEM243"      "DENND3"      
## [616] "BACH2"        "GPCPD1"       "FAM214A"      "CD48"         "ZNF821"      
## [621] "DRAM2"        "ELOVL5"       "SRGN"         "RC3H1"        "MBNL2"       
## [626] "IFITM1"       "SLC25A5"      "CWC25"        "MFHAS1"       "KDM6A"       
## [631] "ILF3-DT"      "ATP1A1"       "BDP1"         "MAP4K4"       "ZC3HAV1"     
## [636] "GNG2"         "ELMO1"        "UVRAG"        "ATP8A1"       "TMX4"        
## [641] "PRDM2"        "RB1"          "SRRM2"        "BSDC1"        "MTCH1"       
## [646] "RNASET2"      "USP34"        "CAMK2D"       "ARID4B"       "MEF2B"       
## [651] "ZNF608"       "RASGRP3"      "NGRN"         "MACF1"        "PPP1R10"     
## [656] "CDK13"        "PPP2R5C"      "ALOX12-AS1"   "ARHGAP4"      "FCRL1"       
## [661] "LNPEP"        "TOR3A"        "PIK3CG"       "GABARAPL1"    "ATP2A3"      
## [666] "MSI2"         "ITGA4"        "SUGCT"        "RELB"         "ST6GAL1"     
## [671] "CD84"         "ERO1B"        "EML6"         "ASH1L"        "ADAM19"      
## [676] "SEL1L3"       "HSPA4"        "MYBL1"        "GABPB1-AS1"   "TTN"         
## [681] "LHPP"